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skills/common/in-progress/knowledge-gardener/SKILL.md
gitadmin e16ca1114a feat(common/in-progress): add knowledge-gardener skill and index README
- Add knowledge-gardener skill for Obsidian vault gardening.

- Add README index for in-progress skills.

- Broaden artifact references in agent-handoff skill.
2026-07-10 09:09:30 -04:00

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---
name: knowledge-gardener
description: Run vault-aware semantic search, synthesis, note creation, linking, and Zettelkasten workflows for this Obsidian vault.
metadata:
vault_style: para-plus-zettelkasten
default_write_folder: Inbox
daily_folder: Dailies
templates_folder: Templates
disable-model-invocation: true
---
## Purpose
This skill turns your agent into a vault-aware Obsidian knowledge gardener.
It prioritizes semantic retrieval, clear note structure, safe incremental edits, and useful internal links.
## Vault Conventions
- Preserve folder casing and names used in this vault: `Inbox/`, `Dailies/`, `projects/`, `resources/`, `archive/`, `Templates/`.
- Use Obsidian wikilinks: `[[Note Title]]`.
- Keep existing frontmatter schema compatible with existing notes:
```yaml
---
id: <slug-or-date-id>
aliases: []
tags: []
area: ""
project: ""
---
```
- Default location for new AI-generated notes is `Inbox/` unless explicitly asked otherwise.
## Core Workflows
1. Semantic Search
- Use `python tools/obsidian_semantic_query.py --vault-root . --query "..." --k 12`.
- Return ranked notes with short relevance rationale.
2. Summarization
- Retrieve nearest notes first, then synthesize.
- Include conflicts, unknowns, and suggested next notes.
3. New Note Creation
- Create with canonical frontmatter.
- Include `## Summary` and optional scaffold sections.
- If a summary is provided, include it verbatim under `## Summary`.
4. Automatic Linking
- Suggest links from semantically related notes.
- Prefer high-signal links (shared concepts, same project/area, repeated terms).
5. Refactor to Atomic Notes
- Split long mixed-topic notes into smaller notes.
- Keep parent note as a structure note and link to children.
6. Metadata Maintenance
- Keep `id`, `aliases`, `tags`, `area`, `project` valid.
- Suggest tags from note content; avoid noisy tag spam.
7. Research Capture
- Store source summary in vault.
- Extract key claims, evidence, confidence, and follow-up questions.
- Distinguish raw source claims, agent synthesis, user opinions, and open questions.
- Convert durable insights into permanent notes.
8. Compiled Wiki Maintenance
- For bounded research topics, maintain a Karpathy-style compiled wiki layer: immutable raw sources → maintained concept/claim/synthesis notes → retrievable answers.
- On ingest, update existing pages before creating duplicates; the graph should get denser, not just larger.
- File durable query answers back into notes, then add or update links from indexes/MOCs.
- Keep a lightweight log of ingests, filed answers, lint passes, promotions, and major corrections when the folder has a `Log.md` or equivalent.
9. Retrieval Lint
- Check for unsupported claims, stale or contradictory claims, orphan notes, missing backlinks, missing glossary terms, and unanswered questions.
- Verify a future agent can answer the main question from the maintained notes without rereading raw sources.
10. Packet Promotion
- Treat research packets as incubators and the main vault as the indexed library.
- Promote notes only when they are reusable beyond the packet, stand alone, have evidence/provenance, and connect to existing vault concepts.
- Leave a link behind in the packet and update relevant indexes/MOCs.
11. Zettelkasten Conversion
- Convert source note into atomic permanent notes.
- Add explicit links and one short structure note (MOC-lite) when useful.
## Quality Guardrails
- Never delete user content unless explicitly requested.
- Prefer additive edits and clear section boundaries.
- Keep writing concise and skimmable.
- Keep tags focused and reusable.
- Keep citations close to claims; do not let synthesized notes obscure source provenance.
- Before finalizing research edits, run a retrieval check: likely future questions should have obvious entry points through indexes, links, claims, or glossary terms.
- Rebuild semantic index after major note creation/refactor sessions.
## Operational Commands
- Build index: `python tools/obsidian_semantic_index.py --vault-root .`
- Query index: `python tools/obsidian_semantic_query.py --vault-root . --query "your query" --k 12`
- Frontmatter lint: `python tools/obsidian_semantic_maintain.py lint --vault-root .`
- Related notes: `python tools/obsidian_semantic_maintain.py related --vault-root . --note "Inbox/your-note.md" --k 8`
## Trigger Hints
Load this skill when the user asks to search, summarize, connect, refactor, or organize Obsidian notes.