chore(packages): re-sort and deduplicate package lists

Alphabetically sorted all three package lists and removed duplicate
entries. Also moved some packages between lists for better grouping
(e.g. dev tools like neovim/rust/go from sjb-base to sjb-dev).

packages/sjb-dev.packages

@@ -1,35 +1,35 @@
-fakeroot
-bun-bin
 clang
-d2-bin
-devcontainer-cli
 dfu-programmer
 dfu-util
-diffutils
 distrobox
+toolbox
 doxygen
-esptool
+fakeroot
 gdb
 gef
 github-cli
-github-copilot-cli-bin
 harper
 hurl
 incus
 jdk-openjdk
 jujutsu
 jupyter-notebook
-mermaid-cli
+lazygit
 mise
 mono
+neovim
+nodejs
+rustup
+go
+uv
+dotnet-runtime
 nuget
 nvm
 odin
-opencode-bin
 podman
 podman-compose
 qemu-user-static
 qemu-user-static-binfmt
 tea
-lazygit
+tree-sitter-cli
 zls