chore(packages): re-sort and deduplicate package lists

Alphabetically sorted all three package lists and removed duplicate
entries. Also moved some packages between lists for better grouping
(e.g. dev tools like neovim/rust/go from sjb-base to sjb-dev).

packages/sjb-base.packages

@@ -4,28 +4,25 @@ acpid
 bolt
 btrfs-assistant
 cpupower
+croc
 dmidecode
 dmraid
-dmraid
 dnsmasq
+dog
 dosfstools
-dosfstools
-e2fsprogs
-e2fsprogs
+dust
 efibootmgr
 efitools
 exfatprogs
 f2fs-tools
 fwupd
 inetutils
-libnewt
 jfsutils
 man-db
 mtools
 networkmanager
 networkmanager-openvpn
 ntfs-3g
-ntfs-3g
 ntp
 openssh
 plymouth-git
@@ -56,7 +53,6 @@ bluez-utils
 
 alsa-firmware
 alsa-plugins
-alsa-utils 
 
 # Shell
 fish
@@ -75,11 +71,10 @@ curl
 duf
 eza
 fd
-fs
 fzf
 git
 jq
-neovim
+vim
 ripgrep
 rsync
 syncthing
@@ -97,25 +92,10 @@ pass
 pass-otp
 
 rclone
-rust
-go
-uv
-nodejs
-dotnet-runtime
-
 gopass
-iamb-bin
-croc
 weechat
 weechat-matrix-rs-git
 
 yt-dlp
-fabric-ai-bin
-
-lazyjj
 resvg
-reader-bin
-portal-bin
-codename-goose-bin
-