feat: updates to neovim config

config/nvim/after/plugin/autocmds.lua

@@ -5,16 +5,16 @@ vim.api.nvim_create_autocmd({ "FocusGained", "BufEnter", "CursorHold", "CursorHo
 })
 
 -- get terminal to follow directory
-vim.api.nvim_create_autocmd({ 'TermRequest' }, {
+-- vim.api.nvim_create_autocmd({ 'TermRequest' }, {
-    desc = 'Handles OSC 7 dir change requests',
+--     desc = 'Handles OSC 7 dir change requests',
-    callback = function(ev)
+--     callback = function(ev)
-        local pwd, n = string.gsub(ev.data.sequence, '\027]7;file://[^/]*', '')
+--         local pwd, n = string.gsub(ev.data.sequence, '\027]7;file://[^/]*', '')
-        if n <= 0 then return end
+--         if n <= 0 then return end
-        if vim.fn.isdirectory(pwd) == 0 then return end
+--         if vim.fn.isdirectory(pwd) == 0 then return end
-        if vim.api.nvim_get_current_buf() ~= ev.buf then return end
+--         if vim.api.nvim_get_current_buf() ~= ev.buf then return end
-        vim.cmd.cd(pwd)
+--         vim.cmd.cd(pwd)
-    end
+--     end
-})
+-- })
 
 -- Check if we need to reload the file when it changed
 vim.api.nvim_create_autocmd({ "FocusGained", "TermClose", "TermLeave" }, {

config/nvim/init.lua

@@ -113,6 +113,7 @@ vim.filetype.add({
 })
 
 vim.pack.add({
+    { src = 'https://github.com/3rd/image.nvim' },
 	{ src = "https://github.com/folke/snacks.nvim" },
     { src = "https://github.com/folke/trouble.nvim" },
     { src = "https://github.com/olimorris/codecompanion.nvim" },
@@ -137,7 +138,6 @@ vim.pack.add({
     { src = 'https://github.com/akinsho/toggleterm.nvim' },
     { src = 'https://github.com/al1-ce/just.nvim' },
     { src = 'https://github.com/cairijun/codecompanion-agentskills.nvim' },
-    { src = 'https://github.com/cairijun/codecompanion-agentskills.nvim' },
     { src = 'https://github.com/carlos-algms/agentic.nvim' },
     { src = 'https://github.com/chipsenkbeil/org-roam.nvim' },
     { src = 'https://github.com/christoomey/vim-tmux-navigator' },
@@ -149,7 +149,6 @@ vim.pack.add({
     { src = 'https://github.com/folke/todo-comments.nvim' },
     { src = 'https://github.com/folke/which-key.nvim' },
     { src = 'https://github.com/franco-ruggeri/codecompanion-spinner.nvim' },
-    { src = 'https://github.com/franco-ruggeri/codecompanion-spinner.nvim' },
     { src = 'https://github.com/hat0uma/csvview.nvim' },
     { src = 'https://github.com/hedyhli/outline.nvim' },
     { src = 'https://github.com/iamcco/markdown-preview.nvim' },
@@ -159,6 +158,7 @@ vim.pack.add({
     { src = 'https://github.com/lervag/vimtex' },
     { src = 'https://github.com/lewis6991/gitsigns.nvim' },
     { src = 'https://github.com/mbbill/undotree' },
+    { src = 'https://github.com/SjB/meow.review.nvim', version = 'fix-invalid-buffer-id' },
     { src = 'https://github.com/mfussenegger/nvim-ansible' },
     { src = 'https://github.com/mfussenegger/nvim-dap' },
     { src = 'https://github.com/mistweaverco/kulala.nvim' },
@@ -184,6 +184,7 @@ vim.pack.add({
     { src = 'https://github.com/nvim-treesitter/nvim-treesitter-context' },
     { src = 'https://github.com/nvim-treesitter/nvim-treesitter-context' },
     { src = 'https://github.com/nvim-treesitter/nvim-treesitter-textobjects', version = 'main' },
+    { src = 'https://github.com/romus204/tree-sitter-manager.nvim' },
     { src = 'https://github.com/obsidian-nvim/obsidian.nvim' },
     { src = 'https://github.com/otavioschwanck/arrow.nvim' },
     { src = 'https://github.com/rafamadriz/friendly-snippets' },
@@ -192,6 +193,7 @@ vim.pack.add({
     { src = 'https://github.com/ravitemer/codecompanion-history.nvim' },
     { src = 'https://github.com/rcarriga/nvim-dap-ui' },
     { src = 'https://github.com/salkin-mada/openscad.nvim' },
+    { src = 'https://github.com/sheng-tse/jupynvim' },
     { src = 'https://github.com/sindrets/diffview.nvim' },
     { src = 'https://github.com/stevearc/conform.nvim' },
     { src = 'https://github.com/stevearc/overseer.nvim' },

config/nvim/plugin/codecompanion.lua

@@ -253,7 +253,9 @@ codecompanion.setup({
         -- },
         agentskills = {
             opts = {
-                { "~/Documents/ai-skills", recursive = true }, 
+                paths = {
+                    { "~/.agents/skills", recursive = true }, 
+                },
             },
         },
         -- vectorcode = { lazy = true },
@@ -265,10 +267,10 @@ codecompanion.setup({
                 save_chat_keymap = "ghs",
                 picker = "snacks",
                 dir_to_save = vim.env.HOME .. "/Documents/ai-history",
-                -- title_generation_opts = {
+                title_generation_opts = {
-                --     adapter = "copilot",
+                    adapter = "copilot",
-                --     model = "gpt-5-mini",
+                    model = "gpt-5-mini",
-                -- },
+                },
                 summary = {
                     create_summary_keymap = "ghc",
                     browse_summaries_keymap = "ghb",
@@ -312,6 +314,7 @@ codecompanion.setup({
                         "fetch",
                         "grep_search",
                         "memory",
+                        "agent_skills",
                         -- "ddgr_search",
                     },
                 },
@@ -519,7 +522,8 @@ codecompanion.setup({
             },
             -- adapter = { name = "abacus", model = "route-llm" },
             -- adapter = { name = "opencode", model = "github-copilot/gpt-5.2-codex" },
-            adapter = { name = "copilot", model = "gpt-5-mini" },
+            -- adapter = { name = "copilot", model = "gpt-5-mini" },
+            adapter = { name = "goose" }, 
         },
         inline = {
             -- adapter = { name = "abacus", model = "route-llm" },

config/nvim/plugin/lsp.lua

@@ -1,5 +1,4 @@
-
+vim.keymap.set("i", "<C-.>", function()
-vim.keymap.set("i", "<C-.>", function() 
     if not vim.lsp.inline_completion.get() then
         return "<C-.>"
     end
@@ -68,7 +67,7 @@ local servers = {
                 },
                 diagnostics = {
                     disable = { 'missing-fields' },
-                    globals = { 'vim', 'require' }, 
+                    globals = { 'vim', 'require' },
                 },
 
             },
@@ -101,14 +100,29 @@ local servers = {
             ["harper-ls"] = {
                 linters = {
                     SentenceCapitalization = true,
-                    SpellCheck = true 
+                    SpellCheck = true
                 },
                 dialect = "Canadian"
             }
         }
     },
     -- csharp_ls = {},
-    zls = {},
+    pyright = {
+        settings = {
+            pyright = {
+                disableOrganizeImports = true,
+                disableTaggedHints = true,
+            },
+            python = {
+                analysis = {
+                    diagnosticSeverityOverrides = {
+                        reportUndefinedVariable = "none",
+                        reportUnusedExpression = "none",
+                    },
+                },
+            },
+        },
+    },
     clangd = {
         settings = {
             ["clang"] = {
@@ -116,7 +130,8 @@ local servers = {
             }
         }
     },
-    rust_analyzer= { 
+    ruff = {},
+    rust_analyzer = {
         settings = {
             ['rust-analyzer'] = {
                 cargo = {
@@ -145,11 +160,12 @@ local servers = {
             },
         }
     },
-    ts_ls= {},
+    ts_ls = {},
-    html= {},
+    html = {},
-    eslint= {},
+    eslint = {},
-    jsonls= {},
+    jsonls = {},
-    jdtls= {},
+    jdtls = {},
+    zls = {},
     copilot = {
         --     settings = {
         --         ['copilot'] = {
@@ -179,7 +195,7 @@ local servers = {
 }
 
 local ensure_installed = vim.tbl_keys(servers or {})
-require('mason-tool-installer').setup ({ ensure_installed = ensure_installed })
+require('mason-tool-installer').setup({ ensure_installed = ensure_installed })
 
 local capabilities = vim.lsp.protocol.make_client_capabilities()
 capabilities = vim.tbl_deep_extend('force', capabilities, require('blink.cmp').get_lsp_capabilities({}, false))
@@ -205,7 +221,7 @@ vim.lsp.inline_completion.enable();
 -- vim.lsp.enable("rust-analyzer", false)
 
 
-require ('mason-nvim-dap').setup({
+require('mason-nvim-dap').setup({
     handlers = {
         function(config)
             -- all sources with no handler get passed here

config/nvim/plugin/meow-review.lua

@@ -0,0 +1,20 @@
+require("meow.review").setup({
+-- Your custom configuration goes here
+})
+
+vim.keymap.set({ "n", "v" }, "<leader>ra", "<Plug>(MeowReviewAdd)", { desc = "Add Review Comment"  })
+vim.keymap.set({ "n", "v" }, "<leader>rd", "<Plug>(MeowReviewDelete)", { desc = "Delete Review Comment"  })
+vim.keymap.set({ 'n' }, "<leader>re", "<Plug>(MeowReviewEdit)", { desc = "Edit Review Comment"  })
+vim.keymap.set({ 'n' }, "<leader>rv", "<Plug>(MeowReviewView)", { desc = "View Review Comment"  })
+vim.keymap.set({ 'n' }, "<leader>rE", "<Plug>(MeowReviewExport)", { desc = "Export Review"  })
+vim.keymap.set({ 'n' }, "<leader>rX", "<Plug>(MeowReviewExportAndClear)", { desc = "Export and Clear"  })
+vim.keymap.set({ 'n' }, "<leader>rf", "<Plug>(MeowReviewExportFile)", { desc = "Export Current File"  })
+vim.keymap.set({ 'n' }, "<leader>rc", "<Plug>(MeowReviewClear)", { desc = "Clear All Comments"  })
+vim.keymap.set({ 'n' }, "<leader>rg", "<Plug>(MeowReviewGoto)", { desc = "Go to Review Comment"  })
+vim.keymap.set({ 'n' }, "<leader>rG", "<Plug>(MeowReviewGotoFile)", { desc = "Go to Comment in File"  })
+vim.keymap.set({ 'n' }, "<leader>rt", "<Plug>(MeowReviewGotoType)", { desc = "Go to Comment by Type"  })
+vim.keymap.set({ 'n' }, "<leader>rR", "<Plug>(MeowReviewResolve)", { desc = "Resolve Comment"  })
+vim.keymap.set({ 'n' }, "<leader>rA", "<Plug>(MeowReviewResolveAll)", { desc = "Resolve All Comments"  })
+vim.keymap.set({ 'n' }, "<leader>rr", "<Plug>(MeowReviewReload)", { desc = "Reload Review"  })
+vim.keymap.set({ 'n' }, "]r",         "<Plug>(MeowReviewNext)", { desc = "Next Review Comment"  })
+vim.keymap.set({ 'n' }, "[r",         "<Plug>(MeowReviewPrev)", { desc = "Previous Review Comment"  })

config/nvim/plugin/mini.lua

@@ -72,4 +72,6 @@ require('mini.files').setup({
     },
 })
 
-require('mini.sessions').setup()
+require('mini.sessions').setup({
+    directory = '~/.cache/nvim/sessions',
+})

config/nvim/plugin/obsidian.lua

@@ -27,8 +27,8 @@ require("obsidian").setup({
         tags = "",
     },
     completion = {
-        nvim_cmp = false,
+        -- nvim_cmp = false,
-        blink = true,
+        -- blink = true,
         min_chars = 2,
     },
     link = {

config/nvim/plugin/persistence.lua

@@ -1,3 +1,8 @@
+require("persistence").setup({
+  dir = vim.fn.expand(vim.fn.stdpath("state") .. "/sessions/"), -- directory where session files are saved
+  options = { "buffers", "curdir", "tabpages", "winsize" }, -- sessionoptions used when saving sessions
+})
+
 vim.keymap.set('n', "<leader>xr", function() require("persistence").load() end, { desc = "Restore Session"  })
 vim.keymap.set('n', "<leader>xs", function() require("persistence").save() end, { desc = "Save Session"  })
 vim.keymap.set('n', "<leader>xl", function() require("persistence").load({ last = true }) end, { desc = "Restore Last Session"  })

config/nvim/plugin/snacks.lua

@@ -8,7 +8,7 @@ require('snacks').setup({
     dashboard = { enabled = false },
     explorer = { enabled = false },
     image = {
-        enabled = true,
+        enabled = false,
         inline = false,
         scale = 3, -- nil | 1 (default) | 2  | 3 | ...
         doc = {

config/nvim/plugin/toggleterm.lua

@@ -17,3 +17,4 @@ require("toggleterm").setup({
 })
 
 vim.keymap.set('t', "<esc><esc>", "<c-\\><c-n>", { desc = "Escape input" })
+vim.keymap.set('t', "<leader><esc>", "<c-\\><c-n>", { desc = "Escape input" })

config/nvim/plugin/tools.lua

@@ -10,11 +10,15 @@ require("just").setup({
     notify = vim.notify,       -- what to use to show messages/errors
 })
 require('img-clip').setup()
+require('image').setup({
+    backend = "sixel"
+})
+
 require('sshfs').setup({
     mounts = {
         base_dir = vim.fn.expand("$HOME") .. "/Public", -- where remote mounts are created
     },
-    lead_prefix = "<leader>r",     
+    lead_prefix = "<leader>t",     
     -- Refer to the configuration section below
     -- or leave empty for defaults
 })
@@ -55,6 +59,21 @@ require('trouble').setup({
     },
 })
 
+vim.api.nvim_create_autocmd('PackChanged', { 
+    callback = function()
+        local core = vim.fn.stdpath("data") .. "/site/pack/core/opt/jupynvim/core"
+        vim.fn.system({
+            "cargo", "build", "--release",
+            "--manifest-path", core .. "/Cargo.toml",
+        })
+    end
+})
+
+require("jupynvim").setup({
+    log_level = "debug",
+    image_renderer = "placeholder",  -- "placeholder", "kitty", or "chafa"
+})
+
 require("overseer").setup({
     templates = { "builtin", "user" },
     component_aliases = {

config/nvim/plugin/treesitter.lua

@@ -1,65 +1,73 @@
+require("tree-sitter-manager").setup({
+    -- Default Options
+    -- ensure_installed = {}, -- list of parsers to install at the start of a neovim session
+    -- border = nil, -- border style for the window (e.g. "rounded", "single"), if nil, use the default border style defined by 'vim.o.winborder'. See :h 'winborder' for more info.
+    -- auto_install = false, -- if enabled, install missing parsers when editing a new file
+    -- highlight = true, -- treesitter highlighting is enabled by default
+    -- languages = {}, -- override or add new parser sources
+})
 
-            vim.g.no_plugin_maps = true
+-- vim.g.no_plugin_maps = true
-            local ts_parsers = {
+-- local ts_parsers = {
-                "bash",
+--     "bash",
-                "dockerfile",
+--     "dockerfile",
-                "git_config", "git_rebase", "gitattributes", "gitcommit", "gitignore",
+--     "git_config", "git_rebase", "gitattributes", "gitcommit", "gitignore",
-                "go", "gomod", "gosum",
+--     "go", "gomod", "gosum",
-                "json", "toml", "yaml",
+--     "json", "toml", "yaml",
-                "lua",
+--     "lua",
-                "make",
+--     "make",
-                "markdown",
+--     "markdown",
-                "python",
+--     "python",
-                "terraform",
+--     "terraform",
-                "vim", "vimdoc",
+--     "vim", "vimdoc",
-                'c',
+--     'c',
-                "lua",
+--     "lua",
-                "markdown",
+--     "markdown",
-                "markdown_inline",
+--     "markdown_inline",
-                "query",
+--     "query",
-                "html", "xml",
+--     "html", "xml",
-                "zig",
+--     "zig",
-                "typescript", "javascript", "svelte",
+--     "typescript", "javascript", "svelte",
-                "regex",
+--     "regex",
-                "rust",
+--     "rust",
-                "http",
+--     "http",
-            }
+-- }
+--
+-- local nts = require("nvim-treesitter")
+-- nts.install(ts_parsers)
+-- -- vim.api.nvim_create_autocmd('PackChanged', {
+-- --     callback = function()
+-- --         nts.update()
+-- --     end
+-- -- })
+--
+vim.api.nvim_create_autocmd("FileType", { -- enable treesitter highlighting and indents
+    callback = function(args)
+        local filetype = args.match
+        local lang = vim.treesitter.language.get_lang(filetype)
+        if vim.treesitter.language.add(lang) then
+            vim.bo.indentexpr = "v:lua.require'nvim-treesitter'.indentexpr()"
+            vim.treesitter.start()
+        end
+    end
+})
 
-            local nts = require("nvim-treesitter")
+-- vim.api.nvim_create_autocmd('FileType', {
-            nts.install(ts_parsers)
+--     pattern = ts_parsers,
-            -- vim.api.nvim_create_autocmd('PackChanged', { 
+--     callback = function()
-            --     callback = function()
+--         vim.treesitter.start()
-            --         nts.update()
+--     end,
-            --     end
+-- })
-            -- })
 
-            vim.api.nvim_create_autocmd("FileType", { -- enable treesitter highlighting and indents
+-- require('ts-context-commentstring').setup({
-                callback = function(args)
+--     enable_autocmd = false
-                    local filetype = args.match
+-- })
-                    local lang = vim.treesitter.language.get_lang(filetype)
-                    if vim.treesitter.language.add(lang) then
-                        vim.bo.indentexpr = "v:lua.require'nvim-treesitter'.indentexpr()"
-                        vim.treesitter.start()
-                    end
-                end
-            })
 
-            -- vim.api.nvim_create_autocmd('FileType', {
+require("treesitter-context").setup({
-            --     pattern = ts_parsers,
+    mode = "cursor",
-            --     callback = function() 
+    max_lines = 3,
-            --         vim.treesitter.start() 
+    multiline_threshold = 1,
-            --     end,
+    separator = '-',
-            -- })
+    min_window_height = 20,
-
+    line_numbers = true,
-            -- require('ts-context-commentstring').setup({
+})
-            --     enable_autocmd = false
-            -- })
-
-            require("treesitter-context").setup({
-                mode = "cursor", 
-                max_lines = 3,
-                multiline_threshold = 1,
-                separator = '-',
-                min_window_height = 20,
-                line_numbers = true,
-            })